ABCD for data publication
From GFBio Public Wiki
ABCD 2.06 as standard for data publication with GFBio consensus elements and GFBio use case
The GFBio initiative agreed to have the following ABCD 2.06 core elements as mandatory or recommended for datasets with biodiversity occurrence data, see wiki representation of ABCD 2.06.
All biodiversity & collection datasets to be published via the GFBio portal have to deliver information which is transfored to Pansimple and processed for the GFBio harvesting tool. The table below lists the elements for dissemination of "datasets" with "data records (= units)" structured according to ABCD. The document will be extended within the next years and modified following new ratified versions of ABCD, e.g. ABCD 3.0.
The GFBio controlled vocabularies for Kingdom (=Regnum) and RecordBasis are provided by the API of the GFBio Terminology Service.
| Elements in bold and red are mandatory within ABCD |
| ABCD elements in normal letters and red are agreed to be mandatory within GFBio |
| Elements in pale red are highly recommended and are mapped by the data centers (using the BioCASe provider software). They are normally included in quality datasets for GFBio dissemination. In some cases, however, the content might not exist or be irrelevant and can be omitted. |
| ABCD elements in italics are not mandatory but recommended. |
| Elements in yellow do not exist in ABCD 2.0; are recommended as new ABCD elements in ABCD 3.xx - |
| Elements with (*) are mandatory for a ABCD and EML compliant GFBio submission tool on dataset level; |
| ABCD (2.06) | ||||
|---|---|---|---|---|
| Element Group | ABCD Element | Link to Technical Concept |
Comments | Example dataset 1, GFBio Data Portal: Search for ZFMK Schneeberg |
| *Dataset GUID | /DataSets/DataSet/DatasetGUID | GUID | id.zfmk.de/dataset_ZFMK/270001 | |
| Dataset ID | /DataSets/DataSet/DatasetID | - | ||
| *Technical Contacts | /DataSets/DataSet/TechnicalContacts/TechnicalContact/Name | TechnicalContact/Name | Data Center ZFMK | |
| Technical Contacts | /DataSets/DataSet/TechnicalContacts/TechnicalContact/Email | TechnicalContact/Email | ZFMKdatacenter@zfmk.de | |
| *Content Contacts | /DataSets/DataSet/ContentContacts/ContentContact/Name | ContentContact/Name | Prof. Dr. R. Beutel | |
| *Description | /DataSets/DataSet/Metadata/Description/Representation/Title | Title | Collection of specimens from descriptive data of head structures in Diptera | |
| Description | /DataSets/DataSet/Metadata/Description/Representation/Details | Details | Detailed description of the data set from the thesis of Dr. rer. nat. Katharina Schneeberg: The evolution of head structures in Diptera and the phylogeny of the order, Friedrich-Schiller-Universität Jena (2014) as part of the DFG project The Evolution of larval and adult features in Diptera (Insecta). DFG RB 1789/6 | |
| *Description | /DataSets/DataSet/Metadata/Description/Representation/URI | URI | here URI of dataset homepage and description or - alternatively - the LandingpageURI on dataset level generated via BMS service | LandingpageURI on dataset level generated via BMS service or http://gepris.dfg.de/gepris/projekt/164998788 |
| Related Dataset | /DataSets/DataSet/RelatedDatasets/RelatedDataset/Name/ | |||
| Related Dataset | /DataSets/DataSet/RelatedDatasets/RelatedDataset/URL/ | |||
| Related Dataset GUID (to be mapped on dataset level) | /DataSets/DataSet/Units/Unit/Description/RelatedDatasetGUID | - | ||
| Related Dataset ID (to be mapped on dataset level) | /DataSets/DataSet//Units/Unit/Description/RelatedDatasetID | - | ||
| Revision | /DataSets/DataSet/Metadata/RevisionData/DateModified | DateModified | 2016-05-10 09:27:07 | |
| IPRStatements | /DataSets/DataSet/Metadata/IPRStatements/Licenses/License/Text | IPRStatements/Licenses/License/Text | CC BY-SA 4.0 | |
| IPRStatements | /DataSets/DataSet/Metadata/IPRStatements/Licenses/License/Details | IPRStatements/Licenses/License/Details | ||
| IPRStatements | /DataSets/DataSet/Metadata/IPRStatements/Licenses/License/URI | IPRStatements/Licenses/License/URI | https://creativecommons.org/licenses/by-sa/4.0/ | |
| IPRStatements | /DataSets/DataSet/Metadata/IPRStatements/TermsOfUseStatements/TermsOfUse/Text | IPRStatements/TermsOfUseStatements/TermsOfUse/Text | ||
| IPRStatements | /DataSets/DataSet/Metadata/IPRStatements/Citations/Citation/Text | IPRStatements/Citations/Citation/Text | Schneeberg, K. (2014). The evolution of head structures in Diptera and the phylogeny of the order. PhD Thesis, Friedrich-Schiller-Universität Jena. [Dataset]. Version: 1.2. Data Publisher: Zoological Research Museum Koenig - Leibniz Institute for Animal Biodiversity. https://doi.org/10.20363//UJDIP.PHYLCOLL.ALL.V1. | |
| IPRStatements | /DataSets/DataSet/Metadata/IPRStatements/Citations/Citation/Details | IPRStatements/Citations/Citation/Details | ||
| IPRStatements | /DataSets/DataSet/Metadata/IPRStatements/Citations/Citation/URI | IPRStatements/Citations/Citation/URI | ||
| Unit IDs | /DataSets/DataSet/Units/Unit/SourceInstitutionID | SourceInstitutionID | Uni Jena | |
| Unit IDs | /DataSets/DataSet/Units/Unit/SourceID | SourceID | UJ-Diptera | |
| Unit IDs | /DataSets/DataSet/Units/Unit/UnitID | UnitID | UJ-DIP-Phylcoll-10000000 | |
| Unit IDs | /DataSets/DataSet/Units/Unit/DateLastEdited | DateLastEdited | 2016-05-09T11:33:45 | |
| Owner | /DataSets/DataSet/Metadata/Owners/Owner/Organisation/Name/Representation/Text | Representation/Text | Friedrich-Schiller-Universität Jena, Institut für Spezielle Zoologie und Evolutionsbiologie mit Phyletischem Museum | |
| Owner | /DataSets/DataSet/Metadata/Owners/Owner/Person/FullName | FullName | ||
| Owner | /DataSets/DataSet/Metadata/Owners/Owner/Roles/Role | Role | principle investigator | |
| Related Dataset GUID (to be mapped on unit level) | /DataSets/DataSet/Units/Unit/Description/RelatedDatasetGUID | - | ||
| Related Dataset ID (to be mapped on unit level) | /DataSets/DataSet//Units/Unit/Description/RelatedDatasetID | - | ||
| Identification | /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/HigherTaxa/HigherTaxon/HigherTaxonName | HigherTaxonName | regnum, e. g., Animalia, see list of terms and definitions, based on GBIF and CoL; for taxon-based biological data units mandatory! | Animalia |
| Identification | /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/HigherTaxa/HigherTaxon/HigherTaxonRank | HigherTaxonRank | regnum, see list of terms and definitions, based on GBIF and CoL; for taxon-based biological data units mandatory!
A controlled vocabulary (Terminology) for biological taxa "Higher Classification - Kingdom (=Regnum)". Based on GBIF and CoL]; for taxon-based biological data units mandatory! |
regnum |
| Identification | /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString | FullScientificNameString | Axymyia furcata Mcatee, 1921 | |
| RecordBasis | /DataSets/DataSet/Units/Unit/RecordBasis | RecordBasis | See list of terms and definitions, based on GBIF/DwC and BiNHum/ABCD | PreservedSpecimen |
| MultiMedia | /DataSets/DataSet/Units/Unit/MultiMediaObjects/MultiMediaObject/FileURI | FileURI | ||
| MultiMedia | /DataSets/DataSet/Units/Unit/MultiMediaObjects/MultiMediaObject/Format | Format | ||
| MultiMedia | /DataSets/DataSet/Units/Unit/MultiMediaObjects/MultiMediaObject/IPR/Licenses/License/Text | Licence/Text | ||
| MultiMedia | /DataSets/DataSet/Units/Unit/MultiMediaObjects/MultiMediaObject/IPR/Licenses/License/Details | Licence/Details | ||
| MultiMedia | /DataSets/DataSet/Units/Unit/MultiMediaObjects/MultiMediaObject/IPR/Licenses/License/URI | Licence/URI | ||
| MultiMedia | /DataSets/DataSet/Units/Unit/MultiMediaObjects/MultiMediaObject/Creator | Creator | ||
| Gathering | /DataSets/DataSet/Units/Unit/Gathering/DateTime/ISODateTimeBegin | ISODateTimeBegin | in palaeontological and geological units often not available | 2008-09-04 |
| Gathering | /DataSets/DataSet/Units/Unit/Gathering/Agents/GatheringAgent/AgentText | AgentText | Schneeberg, K. | |
| Gathering | /DataSets/DataSet/Units/Unit/Gathering/LocalityText | LocalityText | Great Smoky Mountains National Park | |
| Gathering | /DataSets/DataSet/Units/Unit/Gathering/Country/Name | CountryName | for marine areas see element "AreaName" | United States |
| Gathering | /DataSets/DataSet/Units/Unit/Gathering/Country/ISO3166Code | ISO3166Code | US | |
| Gathering | /DataSets/DataSet/Units/Unit/Gathering/NamedAreas/NamedArea/AreaName | AreaName | alternative to country; applicable in marine areas | |
| Gathering | /DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/CoordinatesLatLong/LongitudeDecimal | LongitudeDecimal | ||
| Gathering | /DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/CoordinatesLatLong/LatitudeDecimal | LatitudeDecimal | ||
| Gathering | /DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/CoordinatesLatLong/SpatialDatum | SpatialDatum | only applicable if coordinates are present, then mandatory | |
| Gathering | /DataSets/DataSet/Units/Unit/Gathering/Stratigraphy/ChronostratigraphicTerms/ChronostratigraphicTerm/Term | ChronostratigraphicTerm/Term | for palaeontological and geological units | |
| Gathering | /DataSets/DataSet/Units/Unit/Gathering/Stratigraphy/LithostratigraphicTerms/LithostratigraphicTerm/Term | LithostratigraphicTerm/Term | for palaeontological and geological units | |
| RecordURI | /DataSets/DataSet/Units/Unit/RecordURI | RecordURI | here landingpageURI on data unit level; in the case that this element is not filled, the BMS Service will generate the content (=BioCASe unit landingpage) | landingpage on UnitLevel generated via BMS Service |
| Other notable Elements | ||||
| Scope | /DataSets/DataSet/Metadata/Scope/GeoecologicalTerms/GeoEcologicalTerm | GeoEcologicalTerm | ||
| Unit GUIDs | /DataSets/DataSet/Units/Unit/UnitGUID | UnitGUID | e.g. for collection object stable identifiers and stable URIs of existing landingpages on UnitLevel | http://id.zfmk.de/collection_ZFMK/10000000/998153/200892 |
| TitleCitation (Unit) | /DataSets/DataSet/Units/Unit/UnitReferences/UnitReference/TitleCitation | TitleCitation | ||
| CollectorsFieldNumber (Unit) | /DataSets/DataSet/Units/Unit/CollectorsFieldNumber | CollectorsFieldNumber | ||
| MeasurementsAndFacts | /DataSets/DataSet/Units/Unit/MeasurementsOrFacts | MeasurementsOrFacts | ||
| Association, AssociatedUnitID | /DataSets/DataSet/Units/Unit/Associations/UnitAssociation/AssociatedUnitID | AssociatedUnitID | ||
| AssociatedUnitSourceInstitutionCode | DataSets/DataSet/Units/Unit/Associations/UnitAssociation/AssociatedUnitSourceInstitutionCode | AssociatedUnitSourceInstitutionCode | recommended if AssociatedUnitID exists | |
| AssociatedUnitSourceName | DataSets/DataSet/Units/Unit/Associations/UnitAssociation/AssociatedUnitSourceName | AssociatedUnitSourceName | recommended if AssociatedUnitID exists | |
| AssociationType | DataSets/DataSet/Units/Unit/Associations/UnitAssociation/AssociationType | AssociationType | recommended if AssociatedUnitID exists | |
