Difference between revisions of "Technical documentation of management systems, data processing and publication tools not specialised on collection data"
From GFBio Public Wiki
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! style="width:12%" | [http://bacdive.dsmz.de BacDive] | ! style="width:12%" | [http://bacdive.dsmz.de BacDive] | ||
! style="width:12%" | BioCASe Monitor Service | ! style="width:12%" | BioCASe Monitor Service | ||
| − | ! style="width:12%" |BioCASe Provider Software | + | ! style="width:12%" |[http://www.biocase.org/products/provider_software/index.shtml BioCASe Provider Software] |
! style="width:12%" | [http://diversityworkbench.net/Portal/DiversityDescriptions DiversityDescriptions] (DD) | ! style="width:12%" | [http://diversityworkbench.net/Portal/DiversityDescriptions DiversityDescriptions] (DD) | ||
! style="width:12%" | [http://diversityworkbench.net/Portal/DiversityProjects DiversityProjects] (DP) | ! style="width:12%" | [http://diversityworkbench.net/Portal/DiversityProjects DiversityProjects] (DP) | ||
| Line 27: | Line 27: | ||
|DSMZ | |DSMZ | ||
| | | | ||
| − | | | + | |BGBM, DSMZ, MfN, SGN, SNSB, ZFMK |
|SMNS, SNSB, ZFMK | |SMNS, SNSB, ZFMK | ||
|SMNS, SNSB, ZFMK | |SMNS, SNSB, ZFMK | ||
| Line 40: | Line 40: | ||
|C. Söhngen, A. Podstawka and B. Bunk (Mailcontact of BacDive Team: mailto:contact@bacdive.de) | |C. Söhngen, A. Podstawka and B. Bunk (Mailcontact of BacDive Team: mailto:contact@bacdive.de) | ||
| | | | ||
| − | | | + | |J. Holetschek (BGBM) |
|V. Sanz and A. Link (SNSB) | |V. Sanz and A. Link (SNSB) | ||
|T. Weibulat and D. Triebel (SNSB) | |T. Weibulat and D. Triebel (SNSB) | ||
| Line 53: | Line 53: | ||
|DSMZ IT Services & Bioinformatics Group | |DSMZ IT Services & Bioinformatics Group | ||
| | | | ||
| − | | | + | |Biodiversity Informatics BGBM, Germany |
|SNSB IT Center Germany (together with MfN and UBT as far as the whole DWB platform is concerned) | |SNSB IT Center Germany (together with MfN and UBT as far as the whole DWB platform is concerned) | ||
|SNSB IT Center Germany (together with MfN and UBT as far as the whole DWB platform is concerned) | |SNSB IT Center Germany (together with MfN and UBT as far as the whole DWB platform is concerned) | ||
| Line 66: | Line 66: | ||
|scientific collection data, trait data, physiological, morphological and environmental descriptions | |scientific collection data, trait data, physiological, morphological and environmental descriptions | ||
| | | | ||
| − | | | + | |collection data, collection management data, observation data |
|triple-structured scientific data, e. g. any kind of descriptive or trait data, attribute data, molecular sequence data, sampling data; matrix data import; interactive key functions | |triple-structured scientific data, e. g. any kind of descriptive or trait data, attribute data, molecular sequence data, sampling data; matrix data import; interactive key functions | ||
|scientific project-specific metadata and data package-specific metadata, project settings and identifiers | |scientific project-specific metadata and data package-specific metadata, project settings and identifiers | ||
| Line 79: | Line 79: | ||
|Bacteria and Archaea (other groups of microorganisms may be in future releases) | |Bacteria and Archaea (other groups of microorganisms may be in future releases) | ||
| | | | ||
| − | | | + | |all recent and fossil organism groups |
|all | |all | ||
|all | |all | ||
| Line 93: | Line 93: | ||
| Ubuntu 12.04 (Apache) | | Ubuntu 12.04 (Apache) | ||
| | | | ||
| − | | | + | |MS Windows, Linux, Unix, Mac (any OS that runs Python 2.5, 2.6, 2.7) |
|MS Windows Server 2008 R2, 2012 R2; (clients from MS Windows XP to MS Windows 10) | |MS Windows Server 2008 R2, 2012 R2; (clients from MS Windows XP to MS Windows 10) | ||
|MS Windows Server 2008 R2, 2012 R2; (clients from MS Windows XP to MS Windows 10) | |MS Windows Server 2008 R2, 2012 R2; (clients from MS Windows XP to MS Windows 10) | ||
| Line 106: | Line 106: | ||
|MySQL 5.1 | |MySQL 5.1 | ||
| | | | ||
| − | | | + | |MS SQL Server, MySQL, Access, Oracle, Postgres, 4D, Firebirs, Foxpro, Sybase; Excel, CSV |
|MS SQL-Server 2014 | |MS SQL-Server 2014 | ||
|MS SQL-Server 2014 | |MS SQL-Server 2014 | ||
| Line 119: | Line 119: | ||
|Read rights global, write individual | |Read rights global, write individual | ||
| | | | ||
| − | | | + | |On DB level |
|MS SQL-Server specific; few DWB specific features and roles added | |MS SQL-Server specific; few DWB specific features and roles added | ||
|MS SQL-Server specific; few DWB specific features and roles added | |MS SQL-Server specific; few DWB specific features and roles added | ||
| Line 132: | Line 132: | ||
|Webapplication, Frontend every common webbrowser | |Webapplication, Frontend every common webbrowser | ||
| | | | ||
| − | | | + | |Webbrowser |
|C# desktop application (rich client) (and Web API for the LIASlight project under construction) | |C# desktop application (rich client) (and Web API for the LIASlight project under construction) | ||
|C# desktop application (rich client) | |C# desktop application (rich client) | ||
| Line 145: | Line 145: | ||
| - | | - | ||
| | | | ||
| − | | | + | | not applicable |
| - | | - | ||
| - | | - | ||
| Line 158: | Line 158: | ||
| - | | - | ||
| | | | ||
| − | | | + | | - |
|Import wizard (DELTA, SDD, CSV), matrix wizard, local import (FASTA, FASTQ) | |Import wizard (DELTA, SDD, CSV), matrix wizard, local import (FASTA, FASTQ) | ||
|generic import tool (coming soon); CSV | |generic import tool (coming soon); CSV | ||
| Line 171: | Line 171: | ||
|CSV,PDF, via webservice: XML, JSON | |CSV,PDF, via webservice: XML, JSON | ||
| | | | ||
| − | | | + | | ABCD and DwC archive export |
|Export (DELTA, SDD, CSV, FASTA, FASTQ) | |Export (DELTA, SDD, CSV, FASTA, FASTQ) | ||
|various export tools, export wizard (coming soon) | |various export tools, export wizard (coming soon) | ||
| Line 184: | Line 184: | ||
|English | |English | ||
| | | | ||
| − | | | + | |English |
|default: english (multilingual through translation tables) | |default: english (multilingual through translation tables) | ||
|default: english (multilingual through translation tables) | |default: english (multilingual through translation tables) | ||
| Line 197: | Line 197: | ||
| - | | - | ||
| | | | ||
| − | | | + | |not applicable |
|Yes, [http://diversityworkbench.net/Portal/DiversityDescriptions DD software download] | |Yes, [http://diversityworkbench.net/Portal/DiversityDescriptions DD software download] | ||
|Yes, [http://diversityworkbench.net/Portal/DiversityProjects DP software download] | |Yes, [http://diversityworkbench.net/Portal/DiversityProjects DP software download] | ||
| Line 210: | Line 210: | ||
| - | | - | ||
| | | | ||
| − | | | + | | Yes |
|Yes, [http://svn.snsb.info/repos/DiversityWorkbench/ DWB SVN code repository] | |Yes, [http://svn.snsb.info/repos/DiversityWorkbench/ DWB SVN code repository] | ||
|Yes, [http://svn.snsb.info/repos/DiversityWorkbench/ DWB SVN code repository] | |Yes, [http://svn.snsb.info/repos/DiversityWorkbench/ DWB SVN code repository] | ||
| Line 223: | Line 223: | ||
| - | | - | ||
| | | | ||
| − | | | + | |Mozilla Public License Version 1.1 |
|GPL v.2 | |GPL v.2 | ||
|GPL v.2 | |GPL v.2 | ||
| Line 236: | Line 236: | ||
|[http://gfbio.biowikifarm.net/int/media/f/f2/BacDive_web_model.pdf BacDive model] | |[http://gfbio.biowikifarm.net/int/media/f/f2/BacDive_web_model.pdf BacDive model] | ||
| | | | ||
| − | | | + | |not applicable |
|[http://diversityworkbench.net/Portal/DiversityDescriptions_Information_Models DD data model] | |[http://diversityworkbench.net/Portal/DiversityDescriptions_Information_Models DD data model] | ||
|[http://diversityworkbench.net/Portal/DiversityProjects_Information_Models DP data model] | |[http://diversityworkbench.net/Portal/DiversityProjects_Information_Models DP data model] | ||
| Line 249: | Line 249: | ||
|ongoing | |ongoing | ||
| | | | ||
| − | | | + | |ongoing (latest release version 3.6.3 is http://ww2.biocase.org/svn/bps2/branches/stable ) |
|ongoing (latest stable release see under [http://diversityworkbench.net/Portal/Software DWB Software]) | |ongoing (latest stable release see under [http://diversityworkbench.net/Portal/Software DWB Software]) | ||
|ongoing (latest stable release see under [http://diversityworkbench.net/Portal/Software DWB Software]) | |ongoing (latest stable release see under [http://diversityworkbench.net/Portal/Software DWB Software]) | ||
| Line 262: | Line 262: | ||
|PHP, Python, JavaScript | |PHP, Python, JavaScript | ||
| | | | ||
| − | | | + | |Python, JavaScript |
|C#, .Net Framework, since 2012 | |C#, .Net Framework, since 2012 | ||
|C#, .Net Framework, since 2013 | |C#, .Net Framework, since 2013 | ||
| Line 275: | Line 275: | ||
|[http://bacdive.dsmz.de/help/ Online manual] | |[http://bacdive.dsmz.de/help/ Online manual] | ||
| | | | ||
| − | | | + | |[http://wiki.bgbm.org/bps BPS Wiki]; [http://wiki.bgbm.org/bps/index.php/BeginnersGuide Beginners Guide] |
|DD Manual as pdf file under [http://diversityworkbench.net/Portal/DWB_user_manuals DWB User Manuals] | |DD Manual as pdf file under [http://diversityworkbench.net/Portal/DWB_user_manuals DWB User Manuals] | ||
|DP Manual as pdf file under [http://diversityworkbench.net/Portal/DWB_user_manuals DWB User Manuals] | |DP Manual as pdf file under [http://diversityworkbench.net/Portal/DWB_user_manuals DWB User Manuals] | ||
| Line 288: | Line 288: | ||
|on demand | |on demand | ||
| | | | ||
| − | | | + | |on demand; [http://www.biocase.org/help_desk User Helpdesk] |
|[http://www.snsb.info/Workshops.html DWB workshops] for users and database administrators; DD included since 2013; User Help Desk | |[http://www.snsb.info/Workshops.html DWB workshops] for users and database administrators; DD included since 2013; User Help Desk | ||
|[http://www.snsb.info/Workshops.html DWB workshops] for users and database administrators; DD included since 2013; User Help Desk | |[http://www.snsb.info/Workshops.html DWB workshops] for users and database administrators; DD included since 2013; User Help Desk | ||
| Line 301: | Line 301: | ||
| - | | - | ||
| | | | ||
| − | | | + | | - |
| management of resources (multimedia objects) related to items, descriptors and descriptor states | | management of resources (multimedia objects) related to items, descriptors and descriptor states | ||
| interface for ingest of GFBio submission information packages (SIPs) (in planning stage) | | interface for ingest of GFBio submission information packages (SIPs) (in planning stage) | ||
| Line 315: | Line 315: | ||
| - | | - | ||
| | | | ||
| − | | | + | | Yes |
| - | | - | ||
| + | | + | ||
| Line 341: | Line 341: | ||
|under construction | |under construction | ||
| | | | ||
| − | | | + | | + |
| - | | - | ||
| - | | - | ||
| Line 354: | Line 354: | ||
| - | | - | ||
| | | | ||
| − | | | + | | - |
| - | | - | ||
| coming soon | | coming soon | ||
| Line 367: | Line 367: | ||
| + | | + | ||
| | | | ||
| − | | | + | |LIDO; arbitrary xml schemas can be handled |
|SDD-XML | |SDD-XML | ||
| + | | + | ||
| Line 380: | Line 380: | ||
| + | | + | ||
| | | | ||
| − | | | + | | yes (DwC-Archive) |
| + | | + | ||
| + | | + | ||
| Line 393: | Line 393: | ||
| - | | - | ||
| | | | ||
| − | | | + | | - |
|several document generators (html, MediaWiki format) and pipelines for dynamic web publication; local import and export of molecular sequence data in FASTA and FASTQ format, DELTA export for use by [http://www.navikey.net NaviKey] installations; see also [http://diversityworkbench.net/Portal/DWB_network_and_installations:_Real_life_examples DWB network and installations at SNSB]; [http://diversityworkbench.net/Portal/DWB_network DWB network solutions]; see also [http://diversityworkbench.net/Portal/DiversityDescriptions_Implementations DiversityDescriptions Quiz Version] | |several document generators (html, MediaWiki format) and pipelines for dynamic web publication; local import and export of molecular sequence data in FASTA and FASTQ format, DELTA export for use by [http://www.navikey.net NaviKey] installations; see also [http://diversityworkbench.net/Portal/DWB_network_and_installations:_Real_life_examples DWB network and installations at SNSB]; [http://diversityworkbench.net/Portal/DWB_network DWB network solutions]; see also [http://diversityworkbench.net/Portal/DiversityDescriptions_Implementations DiversityDescriptions Quiz Version] | ||
| - | | - | ||
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| − | Status: | + | Status: January 2017 |
Revision as of 17:07, 12 January 2017
Technical documentation of management systems, data processing and publication tools not specialised on collection data at the GFBio Collection Data Centers, Status May 2016
One of the goals of GFBio is to strengthen the data centers at the Natural History Collections and Culture Collections in Germany and improve their infrastructure to manage, archive and publish biodiversity research data on the long run. As a consequence – latest after the realisation of the GFBio platform and federal infrastructure – they should be able (a) to mobilise their own data resources for research purposes and (b) to provide their technical infrastructure for managing, archiving and publishing biodiversity research data including multimedia data.
The tools and systems below are set up for management, processing and publishing of data from more than one data domain: collection and observation data, trait data, taxonomic, taxon reference and checklist data, sequence data, sampling data, survey data as well as scientific data packages as a whole. Some are browser-based applications with own online portal, others are usable as desk top stand-alone applications or are part of a client-server network. All are involved in the GFBio dataflow and part of the portfolios of GFBio data centers.
In parallel, the GFBio collection data centers documented their installations of collection management systems, multimedia data management systems and of long-term archiving solutions.
| Database system, Homepage | AQUiLA | BacDive | BioCASe Monitor Service | BioCASe Provider Software | DiversityDescriptions (DD) | DiversityProjects (DP) | DiversityTaxonNames (DTN) | EDIT Taxonomic Editor | Metacat | Morph-D-Base | reBiND | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| General Information | Installations at GFBio collection data centers/ archives | SGN | DSMZ | BGBM, DSMZ, MfN, SGN, SNSB, ZFMK | SMNS, SNSB, ZFMK | SMNS, SNSB, ZFMK | SMNS, SNSB, ZFMK | BGBM | SGN | ZFMK | ||
| Contact persons | Alexander Schmid and A. Allspach (SGN) | C. Söhngen, A. Podstawka and B. Bunk (Mailcontact of BacDive Team: mailto:contact@bacdive.de) | J. Holetschek (BGBM) | V. Sanz and A. Link (SNSB) | T. Weibulat and D. Triebel (SNSB) | J. Monje (SMNS), D. Triebel (SNSB) and P. Grobe (ZFMK) | A. Müller and K. Luther (BGBM) | E.-M. Gerstner and C. Weiland (SGN) | L. Vogt (Uni Bonn) and P. Grobe (ZFMK) | |||
| Developer group, country | Senckenberg IT Services; Team Application Development | DSMZ IT Services & Bioinformatics Group | Biodiversity Informatics BGBM, Germany | SNSB IT Center Germany (together with MfN and UBT as far as the whole DWB platform is concerned) | SNSB IT Center Germany (together with MfN and UBT as far as the whole DWB platform is concerned) | SNSB IT Center Germany (together with MfN and UBT as far as the whole DWB platform is concerned) | BGBM (and Naturalis, NL implementing the Validation Framework) | Knowledge Network for Biocomplexity (KNB), U.S.A. | Biodiversity Informatics ZFMK | |||
| Data domains | collection data, collection management data, observation data | scientific collection data, trait data, physiological, morphological and environmental descriptions | collection data, collection management data, observation data | triple-structured scientific data, e. g. any kind of descriptive or trait data, attribute data, molecular sequence data, sampling data; matrix data import; interactive key functions | scientific project-specific metadata and data package-specific metadata, project settings and identifiers | taxonomic data, taxon reference and checklist data | collection data, taxonomic data (core functionality), molecular data, descriptive data, identification keys | scientific data packages, data sets and data tables, particularly from ecology and environmental science | morphological descriptions, taxonomic data, character matrices; current project: ontology based descriptions | |||
| Organismic data | all recent and fossil organisms groups; geological data | Bacteria and Archaea (other groups of microorganisms may be in future releases) | all recent and fossil organism groups | all | all | all recent and fossil organisms groups | all recent and fossil organisms groups (potentially) | all | all | |||
| Software and Database System | Server Operating System | Ubuntu, Apache Tomcat, Mapserver | Ubuntu 12.04 (Apache) | MS Windows, Linux, Unix, Mac (any OS that runs Python 2.5, 2.6, 2.7) | MS Windows Server 2008 R2, 2012 R2; (clients from MS Windows XP to MS Windows 10) | MS Windows Server 2008 R2, 2012 R2; (clients from MS Windows XP to MS Windows 10) | MS Windows Server 2008 R2, 2012 R2; (clients from MS Windows XP to MS Windows 10) | Linux, Mac OS, MS Windows | Linux, Mac OS, MS Windows | Linux | ||
| Database system | PostgreSQL | MySQL 5.1 | MS SQL Server, MySQL, Access, Oracle, Postgres, 4D, Firebirs, Foxpro, Sybase; Excel, CSV | MS SQL-Server 2014 | MS SQL-Server 2014 | MS SQL-Server 2014 | MySQL, PostgreSQL, H2, SQL Server | PostgreSQL (or another SQL92-compliant RDBMS like Oracle) | MySQL, ZOPE ODB | |||
| User rights management | Granular user rights assignment | Read rights global, write individual | On DB level | MS SQL-Server specific; few DWB specific features and roles added | MS SQL-Server specific; few DWB specific features and roles added | MS SQL-Server specific; few DWB specific features and roles added | Roles can be assigned to users according to taxonomic groups and data types (e.g. distribution data only). Project admins have rights to edit all types of data. The underlying software library allows very granular user rights assignment (not yet implemented in the user interface) | Metacat supports internal password file authentication or the use of LDAP as an external authentication mechanism; multiple access right control (specification of rwx rights to single persons, user groups, etc.) in combination with Morpho, a Java-based import wizard for EML which interfaces with the KNB Metacat server | Group based user rights. Entries can be shared read-only or writable within groups. Released entries readable by the public | |||
| Client | Webapplication, Frontend every common webbrowser | Webapplication, Frontend every common webbrowser | Webbrowser | C# desktop application (rich client) (and Web API for the LIASlight project under construction) | C# desktop application (rich client) | C# desktop application (rich client) | desktop application (rich-client), browser based client (for less complex operations, in development) | Browser based client | Browser based client | |||
| GIS functionalities | PostGIS extension, Mapserver (WMS/WFS) | - | not applicable | - | - | - | Visualization of distribution and point maps | PostGIS extension, Geoserver (WMS/WFS) | None | |||
| GUIs for data import | generic import tool; import wizard coming soon | - | - | Import wizard (DELTA, SDD, CSV), matrix wizard, local import (FASTA, FASTQ) | generic import tool (coming soon); CSV | generic import tool, import wizard; CSV | Currently very simple (but more complex UIs planned) | Webform or Morpho | direct into the database, bulk upload of images possible | |||
| GUIs for data export/ reports | EXCEL, CSV | CSV,PDF, via webservice: XML, JSON | ABCD and DwC archive export | Export (DELTA, SDD, CSV, FASTA, FASTQ) | various export tools, export wizard (coming soon) | various export tools (e. g. for hierarchy, for accepted names etc.), export wizard; CSV | Currently very simple (but more complex UIs planned) | Export format: EML, Download via Webform or Morpho | CSV, RDF (in development) | |||
| GUI language | German, English | English | English | default: english (multilingual through translation tables) | default: english (multilingual through translation tables) | default: english (multilingual through translation tables) | English and German (Easy to extend for other languages) | English | English | |||
| Open access | - | - | not applicable | Yes, DD software download | Yes, DP software download | Yes, DTN software download | Yes | Yes | Yes | |||
| Open source | - | - | Yes | Yes, DWB SVN code repository | Yes, DWB SVN code repository | Yes, DWB SVN code repository | Yes, http://cybertaxonomy.eu/taxeditor/source-repository.html | Yes, (Download source distribution) | Available on request | |||
| Licenses | - | - | Mozilla Public License Version 1.1 | GPL v.2 | GPL v.2 | GPL v.2 | Mozilla Public License Version 1.2 (Project License) | GPL | GPL | |||
| Information model online | BacDive model | not applicable | DD data model | DP data model | DTN data model | Common Data Model (CDM) http://cybertaxonomy.eu/cdm/latest/ | - | Coming soon | ||||
| State of development | ongoing; beta version (search portal) online: https://search.senckenberg.de/aquila-public-search/search, http://www.senckenberg.de/root/index.php?page_id=2868 | ongoing | ongoing (latest release version 3.6.3 is http://ww2.biocase.org/svn/bps2/branches/stable ) | ongoing (latest stable release see under DWB Software) | ongoing (latest stable release see under DWB Software) | ongoing (latest stable release see under DWB Software) | ongoing (latest stable release Version 4.1.1, http://cybertaxonomy.eu/download/taxeditor/stable/ released 07.12.2016) | Vers. 2.5.1 (released January, 2016) | Ver. 3.3 | |||
| Code language, developer platform | Java, JavaServer Faces, PrimeFaces | PHP, Python, JavaScript | Python, JavaScript | C#, .Net Framework, since 2012 | C#, .Net Framework, since 2013 | C#, .Net Framework, since 2005 | Java, Eclipse | Java, JSP | Python | |||
| User manual | - | Online manual | BPS Wiki; Beginners Guide | DD Manual as pdf file under DWB User Manuals | DP Manual as pdf file under DWB User Manuals | DTN Manual as pdf file under DWB User Manuals | Integrated into the help system of the software. Online available only older versions. Update is planned. | Online manual (Metacat Administration Guide) | -- | |||
| Training | on demand | on demand | on demand; User Helpdesk | DWB workshops for users and database administrators; DD included since 2013; User Help Desk | DWB workshops for users and database administrators; DD included since 2013; User Help Desk | DWB workshops for users and database administrators; User Help Desk | on demand; Testversion of EDIT Demo-DB with nightly reset, usable with current EDIT version; Handout-EDIT-Platform-Workshop | - | Workshops, individuals on demand | |||
| Notes | - | - | - | management of resources (multimedia objects) related to items, descriptors and descriptor states | interface for ingest of GFBio submission information packages (SIPs) (in planning stage) | - | - | - | - | |||
| Interfaces to export data in various schemas and standards | xml according ABCD schema | - | - | Yes | - | + | - | + | - | - | ||
| BioCASe Wrapper Version installed, description of dataflow | BioCASe Wrapper V. 3.6.1, underlying db: PostgreSQL view | BioCASe Wrapper V. 3.5, BacDive export under construction | - | - | - | possible on demand | planned | coming soon | ||||
| xml according DarwinCore schema | - | under construction | + | - | - | + | in preparation (currently no priority) | - | not planned | |||
| xml according EML schema | - | - | - | - | coming soon | - | in preparation (currently no priority) | yes | not planned | |||
| xml according other schemas | - | + | LIDO; arbitrary xml schemas can be handled | SDD-XML | + | + | CDM-XML. Most data are available through WebServices, most of them as XML or JSON. Documentation available at http://cybertaxonomy.eu/cdmlib/rest-api.html | Transformations from EML to Dublin Core performed by Metacat OAI-PMH produce simple Dublin Core (DC). | DC; RDF in development | |||
| txt, CSV export | + | + | yes (DwC-Archive) | + | + | + (export wizard) | DarwinCore-Archive (csv incl. metadata), Excel (for taxonomic core data) | - | csv | |||
| Notes | - | - | - | several document generators (html, MediaWiki format) and pipelines for dynamic web publication; local import and export of molecular sequence data in FASTA and FASTQ format, DELTA export for use by NaviKey installations; see also DWB network and installations at SNSB; DWB network solutions; see also DiversityDescriptions Quiz Version | - | DTN managed open data (taxon reference lists and checklists) are in the DWB cloud at SNSB IT Center and available through DTN REST Web Service; documentation under http://services.snsb.info/DTNtaxonlists/rest/v0.1/static/api-doc.html | Remote editor included since Version 3.11; browser based editor (to improve usability) currently available for occurance data; development ongoing and close related to the overall development of the TaxonomicEditor. | The establishment of a Metacat repository does not mean that the database system automatically has a connection to DataOne. SGN will manage and archive the GFBio compliant EML-structured xml-files completely independently (though membership to DataOne might be considered.) | - |
Status: January 2017
