Difference between revisions of "ABCD for data publication"
From GFBio Public Wiki
| Line 399: | Line 399: | ||
| | | | ||
|} | |} | ||
| − | |||
| − | |||
Revision as of 12:41, 7 June 2018
In the following table, elements for dissemination of "datasets" with "data records (= units)" structured according to ABCD can be found. If a dataset should be published in the GFBio portal, there are some infomations mandatory, while others are just highly recommended or recommended.
| Elements in bold and red are mandatory within ABCD |
| ABCD elements in normal letters and red are agreed to be mandatory within GFBio |
| Elements in pale red are highly recommended and are mapped by the data centers (using the BioCASe provider software). They are normally included in quality datasets for GFBio dissemination. In some cases, however, the content might not exist or be irrelevant and can be omitted. |
| ABCD elements in italics are not mandatory but recommended. |
| Elements in yellow do not exist in ABCD 2.0; might be recommended as new ABCD elements in ABCD 3.xx - |
| Elements with (*) are mandatory for a ABCD and EML compliant GFBio submission tool on dataset level; |
| ABCD (2.06) | ||||
|---|---|---|---|---|
| Element Group | ABCD Element | Link to Technical Concept |
Comments | Example WP3.3 - P. Grobe, i. e. recently mobilised ABCD compliant data set from DFG project |
| *Dataset GUID | /DataSets/DataSet/DatasetGUID | GUID | id.zfmk.de/dataset_ZFMK/270001 | |
| Dataset ID | /DataSets/DataSet/DatasetID | - | ||
| *Technical Contacts | /DataSets/DataSet/TechnicalContacts/TechnicalContact/Name | TechnicalContact/Name | Data Center ZFMK | |
| Technical Contacts | /DataSets/DataSet/TechnicalContacts/TechnicalContact/Email | TechnicalContact/Email | ZFMKdatacenter@zfmk.de | |
| *Content Contacts | /DataSets/DataSet/ContentContacts/ContentContact/Name | ContentContact/Name | Prof. Dr. R. Beutel | |
| *Description | /DataSets/DataSet/Metadata/Description/Representation/Title | Title | Collection of specimens from descriptive data of head structures in Diptera | |
| Description | /DataSets/DataSet/Metadata/Description/Representation/Details | Details | Detailed description of the data set from the thesis of Dr. rer. nat. Katharina Schneeberg: The evolution of head structures in Diptera and the phylogeny of the order, Friedrich-Schiller-Universität Jena (2014) as part of the DFG project The Evolution of larval and adult features in Diptera (Insecta). DFG RB 1789/6 | |
| *Description | /DataSets/DataSet/Metadata/Description/Representation/URI | URI | here URI of dataset homepage and description or - alternatively - the LandingpageURI on dataset level generated via BMS service | LandingpageURI on dataset level generated via BMS service or http://gepris.dfg.de/gepris/projekt/164998788 |
| Related Dataset | /DataSets/DataSet/RelatedDatasets/RelatedDataset/Name/ | |||
| Related Dataset | /DataSets/DataSet/RelatedDatasets/RelatedDataset/URL/ | |||
| Related Dataset GUID (to be mapped on dataset level) | /DataSets/DataSet/Units/Unit/Description/RelatedDatasetGUID | - | ||
| Related Dataset ID (to be mapped on dataset level) | /DataSets/DataSet//Units/Unit/Description/RelatedDatasetID | - | ||
| Revision | /DataSets/DataSet/Metadata/RevisionData/DateModified | DateModified | 2016-05-10 09:27:07 | |
| IPRStatements | /DataSets/DataSet/Metadata/IPRStatements/Licenses/License/Text | IPRStatements/Licenses/License/Text | CC BY-SA 4.0 | |
| IPRStatements | /DataSets/DataSet/Metadata/IPRStatements/Licenses/License/Details | IPRStatements/Licenses/License/Details | ||
| IPRStatements | /DataSets/DataSet/Metadata/IPRStatements/Licenses/License/URI | IPRStatements/Licenses/License/URI | https://creativecommons.org/licenses/by-sa/4.0/ | |
| IPRStatements | /DataSets/DataSet/Metadata/IPRStatements/TermsOfUseStatements/TermsOfUse/Text | IPRStatements/TermsOfUseStatements/TermsOfUse/Text | ||
| IPRStatements | /DataSets/DataSet/Metadata/IPRStatements/Citations/Citation/Text | IPRStatements/Citations/Citation/Text | Schneeberg, K. (2014). The evolution of head structures in Diptera and the phylogeny of the order. PhD Thesis, Friedrich-Schiller-Universität Jena. [Dataset]. Version: 1.2. Data Publisher: Zoological Research Museum Koenig - Leibniz Institute for Animal Biodiversity. https://doi.org/10.20363//UJDIP.PHYLCOLL.ALL.V1. | |
| IPRStatements | /DataSets/DataSet/Metadata/IPRStatements/Citations/Citation/Details | IPRStatements/Citations/Citation/Details | ||
| IPRStatements | /DataSets/DataSet/Metadata/IPRStatements/Citations/Citation/URI | IPRStatements/Citations/Citation/URI | ||
| Unit IDs | /DataSets/DataSet/Units/Unit/SourceInstitutionID | SourceInstitutionID | Uni Jena | |
| Unit IDs | /DataSets/DataSet/Units/Unit/SourceID | SourceID | UJ-Diptera | |
| Unit IDs | /DataSets/DataSet/Units/Unit/UnitID | UnitID | UJ-DIP-Phylcoll-10000000 | |
| Unit IDs | /DataSets/DataSet/Units/Unit/DateLastEdited | DateLastEdited | 2016-05-09T11:33:45 | |
| Owner | /DataSets/DataSet/Metadata/Owners/Owner/Organisation/Name/Representation/Text | Representation/Text | Friedrich-Schiller-Universität Jena, Institut für Spezielle Zoologie und Evolutionsbiologie mit Phyletischem Museum | |
| Owner | /DataSets/DataSet/Metadata/Owners/Owner/Person/FullName | FullName | ||
| Owner | /DataSets/DataSet/Metadata/Owners/Owner/Roles/Role | Role | principle investigator | |
| Related Dataset GUID (to be mapped on unit level) | /DataSets/DataSet/Units/Unit/Description/RelatedDatasetGUID | - | ||
| Related Dataset ID (to be mapped on unit level) | /DataSets/DataSet//Units/Unit/Description/RelatedDatasetID | - | ||
| Identification | /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/HigherTaxa/HigherTaxon/HigherTaxonName | HigherTaxonName | regnum, e. g., Animalia see WP5 Agreed controlled vocabularies for GFBio; for taxon-based biological data units mandatory! | Animalia |
| Identification | /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/HigherTaxa/HigherTaxon/HigherTaxonRank | HigherTaxonRank | regnum see WP5 Agreed controlled vocabularies for GFBio; for taxon-based biological data units mandatory! | regnum |
| Identification | /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString | FullScientificNameString | Axymyia furcata Mcatee, 1921 | |
| RecordBasis | /DataSets/DataSet/Units/Unit/RecordBasis | RecordBasis | terms see WP5 Agreed controlled vocabularies for GFBio | PreservedSpecimen |
| MultiMedia | /DataSets/DataSet/Units/Unit/MultiMediaObjects/MultiMediaObject/FileURI | FileURI | ||
| MultiMedia | /DataSets/DataSet/Units/Unit/MultiMediaObjects/MultiMediaObject/Format | Format | ||
| MultiMedia | /DataSets/DataSet/Units/Unit/MultiMediaObjects/MultiMediaObject/IPR/Licenses/License/Text | Licence/Text | ||
| MultiMedia | /DataSets/DataSet/Units/Unit/MultiMediaObjects/MultiMediaObject/IPR/Licenses/License/Details | Licence/Details | ||
| MultiMedia | /DataSets/DataSet/Units/Unit/MultiMediaObjects/MultiMediaObject/IPR/Licenses/License/URI | Licence/URI | ||
| MultiMedia | /DataSets/DataSet/Units/Unit/MultiMediaObjects/MultiMediaObject/Creator | Creator | ||
| Gathering | /DataSets/DataSet/Units/Unit/Gathering/DateTime/ISODateTimeBegin | ISODateTimeBegin | in palaeontological and geological units often not available | 2008-09-04 |
| Gathering | /DataSets/DataSet/Units/Unit/Gathering/Agents/GatheringAgent/AgentText | AgentText | Schneeberg, K. | |
| Gathering | /DataSets/DataSet/Units/Unit/Gathering/LocalityText | LocalityText | Great Smoky Mountains National Park | |
| Gathering | /DataSets/DataSet/Units/Unit/Gathering/Country/Name | CountryName | for marine areas see element "AreaName" | United States |
| Gathering | /DataSets/DataSet/Units/Unit/Gathering/Country/ISO3166Code | ISO3166Code | US | |
| Gathering | /DataSets/DataSet/Units/Unit/Gathering/NamedAreas/NamedArea/AreaName | AreaName | alternative to country; applicable in marine areas | |
| Gathering | /DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/CoordinatesLatLong/LongitudeDecimal | LongitudeDecimal | ||
| Gathering | /DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/CoordinatesLatLong/LatitudeDecimal | LatitudinalDecimal | ||
| Gathering | /DataSets/DataSet/Units/Unit/Gathering/SiteCoordinateSets/SiteCoordinates/CoordinatesLatLong/SpatialDatum | SpatialDatum | only applicable if coordinates are present, then mandatory | |
| Gathering | /DataSets/DataSet/Units/Unit/Gathering/Stratigraphy/ChronostratigraphicTerms/ChronostratigraphicTerm/Term | ChronostratigraphicTerm/Term | for palaeontological and geological units | |
| Gathering | /DataSets/DataSet/Units/Unit/Gathering/Stratigraphy/LithostratigraphicTerms/LithostratigraphicTerm/Term | LithostratigraphicTerm/Term | for palaeontological and geological units | |
| RecordURI | /DataSets/DataSet/Units/Unit/RecordURI | RecordURI | here landingpageURI on data unit level; in the case that this element is not filled, the BMS Service will generate the content (=BioCASe unit landingpage) | landingpage on UnitLevel generated via BMS Service |
| Other notable Elements | ||||
| Scope | /DataSets/DataSet/Metadata/Scope/GeoecologicalTerms/GeoEcologicalTerm | GeoEcologicalTerm | ||
| Unit GUIDs | /DataSets/DataSet/Units/Unit/UnitGUID | UnitGUID | e.g. for collection object stable identifiers and stable URIs of existing landingpages on UnitLevel | http://id.zfmk.de/collection_ZFMK/10000000/998153/200892 |
| TitleCitation (Unit) | /DataSets/DataSet/Units/Unit/UnitReferences/UnitReference/TitleCitation | TitleCitation | ||
| CollectorsFieldNumber (Unit) | /DataSets/DataSet/Units/Unit/CollectorsFieldNumber | CollectorsFieldNumber | ||
| MeasurementsAndFacts | /DataSets/DataSet/Units/Unit/MeasurementsOrFacts | MeasurementsOrFacts | ||
| Association, AssociatedUnitID | /DataSets/DataSet/Units/Unit/Associations/UnitAssociation/AssociatedUnitID | AssociatedUnitID | ||
| AssociatedUnitSourceInstitutionCode | DataSets/DataSet/Units/Unit/Associations/UnitAssociation/AssociatedUnitSourceInstitutionCode | AssociatedUnitSourceInstitutionCode | recommended if AssociatedUnitID exists | |
| AssociatedUnitSourceName | DataSets/DataSet/Units/Unit/Associations/UnitAssociation/AssociatedUnitSourceName | AssociatedUnitSourceName | recommended if AssociatedUnitID exists | |
| AssociationType | DataSets/DataSet/Units/Unit/Associations/UnitAssociation/AssociationType | AssociationType | recommended if AssociatedUnitID exists | |
