28. Diversity Workbench Workshop: How to organise and process biological data using GFBio services

28. Diversity Workbench Workshop: How to organise and process biological data using GFBio services
Local organisation: D. Triebel, T. Weibulat

Location: Menzinger Str. 67, first floor, room number ***

Date: 2016, February 24th

Data Ingest and Work Flows at the GFBio Collection Data Centers SMNS, SNSB and ZFMK, Intro: GFBio Portal: Organisation of Metadata for Submission Introduction: The workshop addresses researchers who intend to manage and preserve own raw data  GFBio cpompliant and  *** come in contact with GFBio teams at three of the data centers. The number of participants is restricted to 20. Each topic is regarded as independent unit and participants might attend one, two or three of them. Technical requirements: The DWB client software will be installed on the Laptops of the participants. The installation will have access to the DWB training environment, also after the end of the training course. The model datasets for import (in csv???? Excel zip) are available here.

First Topic: Collection and Occurrence Data (9:00-11:30 am) Introduction and Demonstration: P. Grobe, B. Klasen (ZFMK) Intro: GFBio Portal Organisation of Metadata for Submission Demonstrations: - Excel files (GFBio Public Wiki) http://gfbio.biowikifarm.net/wiki/Data_submission_forms_for_the_deposit_of_biological_and_environmental_samples http://gfbio.biowikifarm.net/wiki/Data_submission_forms_for_occurrence_data - Import schemas with descriptions (GitHubs SNSB, ZFMK) https://github.com/ZFMK https://github.com/snsb - DC Import Wizard (if there is no matching schema) - Data publication (GBIF with DOI) e.g. http://bms.gfbio.org/ http://gfbio.biowikifarm.net/internal/GFBio_collection_archives_-_ABCD_XML_archives - Model datasets: *** Second Topic: Ecological Matrix Data (12:30-14:00 pm) Introduction and Demonstration: A. Link, V. Sanz, T. Weibulat (SNSB) Intro: GFBio Portal: Organisation of Metadata for Submission Demonstrations: - Import schemas with descriptions (GitHub SNSB) - DD Import Wizard (if there is no matching schema) - Data publication (? PANGAEA with DOI) - Model datasets: BEF China, PANGAEA-Dataset??? http://gfbio.biowikifarm.net/internal/GFBio_collection_archives_-_SDD_DIPs

Third Topic: Checklists and Taxon Reference Lists (14:00-16:00 pm) Introduction and Demonstration: J. Holstein, J. C. Monje (SMNS) Demonstrations: - List Import (otherwise SQL import) - Data management in DiversityTaxonNames - Availability via Rest Web Service http://services.snsb.info/DTNtaxonlists/rest/v0.1/static/api-doc.html - Availability via GFBio Terminology Server (to be done) http://terminologies.gfbio.org/content/external_services.html - Data publication (GBIF with DOI) http://www.gbif.org/dataset/f5c60e9e-5b76-43b7-aa14-bbc3fa23b7d5 - Model datasets: ???